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1

Characterization of the protease activity of detergents laboratory practicals for studying the protease profile and activity of various commercial detergents

Cristina Valls, Gerard Pujadas, Santi Garcia-Vallve, Miquel Mulero

Journal:

Biochemistry and Molecular Biology Education

Year:

2011

Language:

english

File:

PDF, 1.57 MB

english, 2011

2

DecoyFinder: an easy-to-use python GUI application for building target-specific decoy sets

Cereto-Massague, A., Guasch, L., Valls, C., Mulero, M., Pujadas, G., Garcia-Vallve, S.

Journal:

Year:

2012

Language:

english

File:

PDF, 125 KB

english, 2012

3

Tools for in silico target fishing

Cereto-Massagué, Adrià, Ojeda, María José, Valls, Cristina, Mulero, Miquel, Pujadas, Gerard, Garcia-Vallve, Santiago

Journal:

Year:

2015

Language:

english

File:

PDF, 509 KB

english, 2015

4

Molecular fingerprint similarity search in virtual screening

Cereto-Massagué, Adrià, Ojeda, María José, Valls, Cristina, Mulero, Miquel, Garcia-Vallvé, Santiago, Pujadas, Gerard

Journal:

Year:

2015

Language:

english

File:

PDF, 646 KB

english, 2015

5

How do Detergents Work? A Qualitative Assay to Measure Amylase Activity

Novo, M. Teresa, Casanoves, Marina, Garcia-Vallvé, Santi, Pujadas, Gerard, Mulero, Miquel, Valls, Cristina

Journal:

Journal of Biological Education

Year:

2015

Language:

english

File:

PDF, 266 KB

english, 2015

6

Resveratrol Potently Counteracts Quercetin Starvation-Induced Autophagy and Sensitizes HepG2 Cancer Cells to Apoptosis

Tomas-Hernández, Sarah, Blanco, Jordi, Rojas, Cristina, Roca-Martínez, Joel, Ojeda-Montes, María José, Beltrán-Debón, Raúl, Garcia-Vallve, Santiago, Pujadas, Gerard, Arola, Lluís, Mulero, Miquel

Journal:

Molecular Nutrition & Food Research

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

7

Circular permutants in β-glucosidases (family 3) within a predicted double-domain topology that includes a (β/α)8-barrel

Santiago García-Vallvé, Antoni Rojas, Jaume Palau, Antoni Romeu

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 338 KB

english, 1998

8

Contribution of each complex of the mitochondrial respiratory chain in the generation of the proton-motive force

Santiago Garcia-Vallve

Journal:

Biochemistry and Molecular Biology Education

Year:

2004

Language:

english

File:

PDF, 77 KB

english, 2004

9

3D-QSAR Study of Pyridine Derivates as IKK-2 Inhibitors

Esther Sala, Laura Guasch, Montserrat Vaqué, Josep Maria Mateo-Sanz, Mayte Blay, Cinta Bladé, Santiago Garcia-Vallvé, Gerard Pujadas

Journal:

Molecular Informatics

Year:

2009

Language:

english

File:

PDF, 900 KB

english, 2009

10

Simultaneous Horizontal Gene Transfer of a Gene Coding for Ribosomal Protein L27 and Operational Genes in Arthrobacter Sp.

Santiago Garcia-Vallvé, Francesc X. Simó, Miguel A. Montero, Lluís Arola, Antoni Romeu

Journal:

Journal of Molecular Evolution

Year:

2002

Language:

english

File:

PDF, 293 KB

english, 2002

11

Structural insights for the design of new PPARgamma partial agonists with high binding affinity and low transactivation activity

Laura Guasch, Esther Sala, Cristina Valls, Mayte Blay, Miquel Mulero, Lluís Arola, Gerard Pujadas, Santiago Garcia-Vallvé

Journal:

Journal of Computer-Aided Molecular Design

Year:

2011

Language:

english

File:

PDF, 2.13 MB

english, 2011

12

Characterization of the activity and stability of amylase from saliva and detergent: Laboratory practicals for studying the activity and stability of amylase from saliva and various commercial detergents

Cristina Valls, Cristina Rojas, Gerard Pujadas, Santi Garcia-Vallve, Miquel Mulero

Journal:

Biochemistry and Molecular Biology Education

Year:

2012

Language:

english

File:

PDF, 1019 KB

english, 2012

13

Identification of human IKK-2 inhibitors of natural origin (Part II): In Silico prediction of IKK-2 inhibitors in natural extracts with known anti-inflammatory activity

Esther Sala, Laura Guasch, Justyna Iwaszkiewicz, Miquel Mulero, Maria-Josepa Salvadó, Cinta Bladé, Meritxell Ceballos, Cristina Valls, Vincent Zoete, Aurélien Grosdidier, Santiago Garcia-Vallvé, Olivi

Journal:

European Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 242 KB

english, 2011

14

Development of docking-based 3D-QSAR models for PPARgamma full agonists

Laura Guasch, Esther Sala, Cristina Valls, Miquel Mulero, Gerard Pujadas, Santiago Garcia-Vallvé

Journal:

Journal of Molecular Graphics and Modelling

Year:

2012

Language:

english

File:

PDF, 935 KB

english, 2012

15

Gaining and losing the thermophilic adaptation in prokaryotes

Pere Puigbò, Alberto Pasamontes, Santiago Garcia-Vallve

Journal:

Trends in Genetics

Year:

2008

Language:

english

File:

PDF, 699 KB

english, 2008

16

Use of a multi-way method to analyze the amino acid composition of a conserved group of orthologous proteins in prokaryotes

Alberto Pasamontes, Santiago Garcia-Vallve

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 352 KB

english, 2006

17

E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)

Pere Puigbò, Ignacio G Bravo, Santiago Garcia-Vallvé

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 271 KB

english, 2008

18

Different papillomaviruses have different repertoires of transcription factor binding sites: convergence and divergence in the upstream regulatory region

Santiago García-Vallvé, José R Iglesias-Rozas, Ángel Alonso, Ignacio G Bravo

Journal:

BMC Evolutionary Biology

Year:

2006

Language:

english

File:

PDF, 392 KB

english, 2006

19

PairWise Neighbours database: overlaps and spacers among prokaryote genomes

Albert Pallejà, Tomàs Reverter, Santiago Garcia-Vallvé, Antoni Romeu

Journal:

Year:

2009

Language:

english

File:

PDF, 1.30 MB

english, 2009

20

Adaptation of the short intergenic spacers between co-directional genes to the Shine-Dalgarno motif among prokaryote genomes

Albert Pallejà, Santiago García-Vallvé, Antoni Romeu

Journal:

Year:

2009

Language:

english

File:

PDF, 1.05 MB

english, 2009

21

RCDI/eRCDI: a web-server to estimate codon usage deoptimization

Pere Puigbò, Lluís Aragonès, Santiago Garcia-Vallvé

Journal:

BMC Research Notes

Year:

2010

Language:

english

File:

PDF, 475 KB

english, 2010

22

DecoyFinder, a tool for finding decoy molecules

Cereto Massagué Adrià, S Garcia-Vallvé, G Pujadas

Journal:

Journal of Cheminformatics

Year:

2012

Language:

english

File:

PDF, 62 KB

english, 2012

23

OPTIMIZER: a web server for optimizing the codon usage of DNA sequences

Puigbo, P., Guzman, E., Romeu, A., Garcia-Vallve, S.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.32 MB

english, 2007

24

Papillomaviruses: different genes have different histories

Santiago García-Vallvé, Ángel Alonso, Ignacio G. Bravo

Journal:

Trends in Microbiology

Year:

2005

Language:

english

File:

PDF, 187 KB

english, 2005

25

Frameshift mutation events in β-glucosidases

Antonio Rojas, Santiago Garcia-Vallvé, Miguel A. Montero, Lluı́s Arola, Antoni Romeu

Journal:

Year:

2003

Language:

english

File:

PDF, 800 KB

english, 2003

26

Genetic variation between Helicobacter pylori strains: gene acquisition or loss?

Santiago Garcia-Vallvé, Paul J. Janssen, Christos A. Ouzounis

Journal:

Trends in Microbiology

Year:

2002

Language:

english

File:

PDF, 150 KB

english, 2002

27

Procyanidins modify insulinemia by affecting insulin production and degradation

Anna Castell-Auví, Lídia Cedó, Victor Pallarès, M. Teresa Blay, Montserrat Pinent, M. José Motilva, Santiago Garcia-Vallvé, Gerard Pujadas, Pierre Maechler, Anna Ardévol

Journal:

The Journal of Nutritional Biochemistry

Year:

2012

Language:

english

File:

PDF, 856 KB

english, 2012

28

Completely sequenced genomes of pathogenic bacteria: A review

Eduard Guzmán, Antoni Romeu, Santiago Garcia-Vallve

Journal:

Enfermedades Infecciosas y Microbiología Clínica

Year:

2008

Language:

english

File:

PDF, 119 KB

english, 2008

29

CAIcal: A combined set of tools to assess codon usage adaptation

Pere Puigbò, Ignacio G Bravo, Santiago Garcia-Vallve

Journal:

Year:

2008

Language:

english

File:

PDF, 869 KB

english, 2008

30

Grape seed procyanidin extract reduces the endotoxic effects induced by lipopolysaccharide in rats

Pallarès, Victor, Fernández-Iglesias, Anabel, Cedó, Lídia, Castell-Auví, Anna, Pinent, Montserrat, Ardévol, Anna, Salvadó, Maria Josepa, Garcia-Vallvé, Santiago, Blay, Mayte

Journal:

Free Radical Biology and Medicine

Year:

2013

Language:

english

File:

PDF, 751 KB

english, 2013

31

Grape Seed-Derived Procyanidins Decrease Dipeptidyl-peptidase 4 Activity and Expression

González-Abuín, Noemi, Martínez-Micaelo, Neus, Blay, Mayte, Pujadas, Gerard, Garcia-Vallvé, Santiago, Pinent, Montserrat, Ardévol, Anna

Journal:

Journal of Agricultural and Food Chemistry

Year:

2012

Language:

english

File:

PDF, 339 KB

english, 2012

32

The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sites

Cereto-Massagué, Adrià, Ojeda, María, Joosten, Robbie P, Valls, Cristina, Mulero, Miquel, Salvado, M, Arola-Arnal, Anna, Arola, Lluís, Garcia-Vallvé, Santiago, Pujadas, Gerard

Journal:

Journal of Cheminformatics

Year:

2013

Language:

english

File:

PDF, 811 KB

english, 2013

33

TOPD/FMTS: a new software to compare phylogenetic trees

Puigbo, P., Garcia-Vallve, S., McInerney, J. O.

Journal:

Year:

2007

Language:

english

File:

PDF, 77 KB

english, 2007

34

In Silico Prediction of the Origin of Replication among Bacteria: A Case Study of Bacteroides thetaiotaomicron

Pallejà, Albert, Guzman, Eduard, Garcia-Vallvé, Santiago, Romeu, Antoni

Journal:

Omics A Journal of Integrative Biology

Year:

2008

Language:

english

File:

PDF, 436 KB

english, 2008

35

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

Garcia-Vallve, S.

Journal:

Nucleic Acids Research

Year:

2003

Language:

english

File:

PDF, 56 KB

english, 2003

36

Peroxisome Proliferator-Activated Receptor γ (PPARγ) and Ligand Choreography: Newcomers Take the Stage

Garcia-Vallvé, Santiago, Guasch, Laura, Tomas-Hernández, Sarah, del Bas, Josep Maria, Ollendorff, Vincent, Arola, Lluís, Pujadas, Gerard, Mulero, Miquel

Journal:

Journal of Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

37

Horizontal Gene Transfer in Bacterial and Archaeal Complete Genomes

Garcia-Vallve, S.

Journal:

Genome Research

Year:

2000

Language:

english

File:

PDF, 226 KB

english, 2000

38

HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection

Puigbo, P., Romeu, A., Garcia-Vallve, S.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 2.54 MB

english, 2007

39

Identification of Novel Human Dipeptidyl Peptidase-IV Inhibitors of Natural Origin (Part II): In Silico Prediction in Antidiabetic Extracts

Guasch, Laura, Sala, Esther, Ojeda, María José, Valls, Cristina, Bladé, Cinta, Mulero, Miquel, Blay, Mayte, Ardévol, Anna, Garcia-Vallvé, Santiago, Pujadas, Gerard, Uversky, Vladimir N.

Journal:

Year:

2012

Language:

english

File:

PDF, 162 KB

english, 2012

40

The lipid-lowering effect of dietary proanthocyanidins in rats involves both chylomicron-rich and VLDL-rich fractions

Quesada, Helena, Díaz, Sabina, Pajuelo, David, Fernández-Iglesias, Anabel, Garcia-Vallvé, Santiago, Pujadas, Gerard, Salvadó, M. Josepa, Arola, Lluis, Bladé, Cinta

Journal:

British Journal Of Nutrition

Year:

2012

Language:

english

File:

PDF, 145 KB

english, 2012

41

Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis

Garcia-Vallve, S., Palau, J., Romeu, A.

Journal:

Molecular Biology and Evolution

Year:

1999

Language:

english

File:

PDF, 130 KB

english, 1999

42

Nuclear receptors, nuclear-receptor factors, and nuclear-receptor-like orphans form a large paralog cluster in Homo sapiens

Garcia-Vallve, S., Palau, J.

Journal:

Molecular Biology and Evolution

Year:

1998

Language:

english

File:

PDF, 544 KB

english, 1998

43

Horizontal Gene Transfer of Glycosyl Hydrolases of the Rumen Fungi

Garcia-Vallve, S., Romeu, A., Palau, J.

Journal:

Molecular Biology and Evolution

Year:

2000

Language:

english

File:

PDF, 185 KB

english, 2000

44

Ephedrine as a lead compound for the development of new DPP-IV inhibitors

Ojeda-Montes, María José, Ardid-Ruiz, Andrea, Tomás-Hernández, Sarah, Gimeno, Aleix, Cereto-Massagué, Adrià, Beltrán-Debón, Raúl, Mulero, Miquel, Garcia-Vallvé, Santiago, Pujadas, Gerard, Valls, Crist

Journal:

Future Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 2.06 MB

english, 2017

45

Activity and selectivity cliffs for DPP-IV inhibitors: Lessons we can learn from SAR studies and their application to virtual screening

Ojeda-Montes, María José, Gimeno, Aleix, Tomas-Hernández, Sarah, Cereto-Massagué, Adrià, Beltrán-Debón, Raúl, Valls, Cristina, Mulero, Miquel, Pujadas, Gerard, Garcia-Vallvé, Santiago

Journal:

Medicinal Research Reviews

Year:

2018

Language:

english

File:

PDF, 2.71 MB

english, 2018

46

Identification of Novel Human Dipeptidyl Peptidase-IV Inhibitors of Natural Origin (Part I): Virtual Screening and Activity Assays

Guasch, Laura, Ojeda, Maria José, González-Abuín, Noemí, Sala, Esther, Cereto-Massagué, Adrià, Mulero, Miquel, Valls, Cristina, Pinent, Montserrat, Ardévol, Anna, Garcia-Vallvé, Santiago, Pujadas, Ger

Journal:

Year:

2012

Language:

english

File:

PDF, 813 KB

english, 2012

47

Inhibition of Angiotensin-Converting Enzyme Activity by Flavonoids: Structure-Activity Relationship Studies

Guerrero, Ligia, Castillo, Julián, Quiñones, Mar, Garcia-Vallvé, Santiago, Arola, Lluis, Pujadas, Gerard, Muguerza, Begoña, Lu, Jian R.

Journal:

Year:

2012

Language:

english

File:

PDF, 599 KB

english, 2012

48

Resveratrol Enhances Palmitate-Induced ER Stress and Apoptosis in Cancer Cells

Rojas, Cristina, Pan-Castillo, Belén, Valls, Cristina, Pujadas, Gerard, Garcia-Vallve, Santi, Arola, Lluis, Mulero, Miquel, Velasco, Guillermo

Journal:

Year:

2014

Language:

english

File:

PDF, 3.43 MB

english, 2014

49

Annapurna expedition game: applying molecular biology tools to learn genetics

Solé-Llussà, Anna, Casanoves, Marina, Salvadó, Zoel, Garcia-Vallve, Santigo, Valls, Cristina, Novo, Maite

Journal:

Journal of Biological Education

Year:

2018

Language:

english

File:

PDF, 1.09 MB

english, 2018

50

ANTI-INFLAMMATORY AND PRO-APOPTOTIC PROPERTIES OF THE NATURAL COMPOUND O-ORSELLINALDEHYDE

Tomás-Hernández, Sarah, Garcia-Vallvé, Santiago, Pujadas, Gerard, Valls, Cristina, Ojeda-Montes, María José, Gimeno, Aleix, Ceretó-Massagué, Adrià, Roca-Martínez, Joel, Suarez, Manuel, Arola, Lluis, B

Journal:

Journal of Agricultural and Food Chemistry

Year:

2018

Language:

english

File:

PDF, 933 KB

english, 2018